Search

  1. /
  2. Research Pages
  3. /
  4. Genetic Markers (SNPs)...

Genetic Markers (SNPs) For Sex Identification

The sex ratio of the commercial fishery catch represents an extremely important source of uncertainty in the annual stock assessment (Stewart and Hicks, 2020). The IPHC has generated sex information of the entire set of aged commercial fishery samples on an annual basis since 2017 (>10,000 fin clips per year). Sex information is obtained using genetic techniques based on the identification of sex-specific single nucleotide polymorphisms (SNPs) (Drinan et al., 2018) using TaqMan qPCR assays conducted at the IPHC’s Biological Laboratory. Therefore, direct estimates of the sex-ratio at age for the directed commercial fishery are now available for stock assessment. Sex-ratio information of the commercial catch is likely to further inform selectivity parameters and cumulatively reduce uncertainty in future estimates of stock size, in addition to improving simulation of spawning biomass in the MSE Operating Model.

References

Drinan, D.P., Loher, T., and Hauser, L., 2018. Identification of Genomic Regions Associated With Sex in Pacific Halibut. Journal of Heredity 109, 326-332.

Stewart, I.J., and Hicks, A. 2020. Assessment of the Pacific halibut (Hippoglossus stenolepis) stock at the end of 2019. Int. Pac. Halibut Comm. Annual Meeting Report: IPHC-2020-SA-01.

Share:

Share:

In this Section

Economic Research

Management Strategy Evaluation

Stock Assessment

FISS – Catch Per Unit Effort

Vessel Recruiting

Design and Implementation

Biological and Ecosystem Science Research

Tag Recovery and Reward

Non-directed Commercial Discard Mortality

Reproductive Assessment

In this Section

Economic Research

Economic Research Under the Convention (Article III), the IPHC’s mandate is optimum management of the

Management Strategy Evaluation

At its 89th Annual Meeting in 2013, the Commission endorsed

Stock Assessment

Stock Assessment The IPHC conducts an annual stock assessment using

FISS – Catch Per Unit Effort

FISS – Catch Per Unit Effort IPHC FISS Catch Per